| RK | Name | H/L | Time | Gap | Q |
|---|---|---|---|---|---|
| 1 | Mészáros Dániel (2004)FTC | 03:56.85 98.160% | - | D4 | |
| 2 | Gálicz László (2004)FTC | 04:00.12 99.624% | 03.27 | D5 | |
| 3 | Pintér Ádám (2004)Balaton ÚK Veszprém | 04:01.97 99.577% | 05.12 | D3 | |
| 4 | Szedlák Gellért Vajk (2004)Darnyi Tamás SC | 04:03.35 100.495% | 06.50 | D6 | |
| 5 | Juhász-Dóra Richárd (2005)Kőbánya Sport Club | 04:04.22 99.370% | 07.37 | D2 | |
| 6 | Györe Ádám (2004)Egri Úszó Klub | 04:04.34 100.241% | 07.49 | D7 | |
| 7 | Povarnitsyn Alexandr (2004)BVSC-Zugló | 04:04.55 96.953% | 07.70 | VL | |
| 8 | Krstulovic Vladimir (2005)Győri Úszó Sportegy. | 04:06.02 100.562% | 09.17 | D1 | |
| 9 | Deák Levente (2005)Soproni Széchy T. SI | 04:07.54 98.761% | 10.69 | D8 | |
| 10 | Poteczin Dániel (2006)Érdi Vízisport Kft | 04:08.67 99.580% | 11.82 | T1 | |
| 11 | Duca Stefan-Mircea (2006)Egri Úszó Klub | 04:09.56 100.339% | 12.71 | T2 | |
| 12 | Mátrai Levente (2005)Győri Úszó Sportegy. | 04:09.60 101.952% | 12.75 | ||
| 13 | Takács Fábió (2004)KÚKSE | 04:11.02 98.962% | 14.17 | ||
| 14 | Tohl Dániel Antal (2005)Érdi Vízisport Kft | 04:11.13 99.431% | 14.28 | ||
| 15 | Pál Vince (2005)Újpesti Torna Egylet | 04:13.19 99.651% | 16.34 | ||
| 16 | Paksi Zsombor (2006)Szegedi Úszó Egylet | 04:13.42 97.740% | 16.57 | ||
| 17 | Hosszú Máté (2006)Győri Úszó Sportegy. | 04:13.70 96.668% | 16.85 | ||
| 18 | Illés Bence (2005)A Jövő SC | 04:15.26 100.507% | 18.41 | ||
| 19 | Barabás Imre Dávid (2004)Balaton ÚK Veszprém | 04:15.76 99.988% | 18.91 | ||
| 20 | Deák Gergely (2007)A Jövő SC | 04:15.89 99.741% | 19.04 | ||
| 21 | Papp Sebestyén (2008)Újpesti Torna Egylet | 04:16.70 102.414% | 19.85 | ||
| 22 | Kárpáti Máté (2008)Újpesti Torna Egylet | 04:17.00 102.330% | 20.15 | ||
| 23 | Pristavka Timoffi (2005)Ukraine | 04:17.54 102.815% | 20.69 | ||
| 24 | Bencsik Emil Henrik (2005)Érdi Vízisport Kft | 04:18.05 99.732% | 21.20 | ||
| 25 | Kersák Kristóf Balázs (2004)Balaton ÚK Veszprém | 04:18.10 97.819% | 21.25 | ||
| 26 | Szappanos Kristóf (2007)Budaörsi Sport Club | 04:18.61 99.142% | 21.76 | ||
| 27 | Tulipán Bence (2006)Miskolci Sportiskola | 04:18.95 99.640% | 22.10 | ||
| 28 | Szabó János (2004)Gyulai Várfürdő Kft. | 04:18.96 101.502% | 22.11 | ||
| 29 | Rieger Örs István (2006)FTC | 04:19.09 99.523% | 22.24 | ||
| 30 | Nagy-Selmeczy Bulcsú (2007)ZÚK | 04:19.63 98.252% | 22.78 | ||
| 31 | Czeglédi Kenéz (2005)BÁCSVÍZ SC | 04:19.97 99.396% | 23.12 | ||
| 32 | Musa Márk (2007)HódSenior | 04:21.32 97.942% | 24.47 | ||
| 33 | Torma Benjamin (2004)Budaörsi Sport Club | 04:21.53 102.334% | 24.68 | ||
| 34 | Havas Balázs (2006)Gyulai Várfürdő Kft. | 04:21.58 99.701% | 24.73 | ||
| 35 | Szántosi Tamás (2005)Bajai SSC | 04:22.34 100.323% | 25.49 | ||
| 36 | Birkás Botond (2006)Budaörsi Sport Club | 04:22.54 100.447% | 25.69 | ||
| 37 | Barcsák Ambrus (2004)Bajai SSC | 04:23.51 96.039% | 26.66 | ||
| 38 | Kállai Barnabás (2008)Pécsi Sport Nonprof. | 04:24.91 101.053% | 28.06 | ||
| 39 | Csilics Márk (2005)Bajai SSC | 04:25.51 99.363% | 28.66 | ||
| 40 | Kotenko Mykola (2007)Ukraine | 04:25.60 95.884% | 28.75 | ||
| 41 | Mizsey Péter Pál (2007)Budafóka XXII. SE | 04:27.18 99.329% | 30.33 | ||
| 42 | Csernyik Dániel (2006)NYSC | 04:28.10 98.231% | 31.25 | ||
| 43 | Szedlák Kende Magor (2006)Darnyi Tamás SC | 04:30.20 99.546% | 33.35 | ||
| 44 | Bercse Bence (2007)Szombathelyi SK SI | 04:32.51 98.401% | 35.66 | ||
| - | Antal Dávid (2008)Bátori Sárkány ÚE | DNS - | |||
| - | Doszpoly Zsombor (2008)Miskolci Sportiskola | DNS - | |||
| - | Harsányi Mátyás (2005)Kaposvári SI | DNS - | |||
| - | Kakuk Koppány Zéta (2008)Kaposvári SI | DNS - | |||