| RK | Name | H/L | Time | Gap | Q |
|---|---|---|---|---|---|
| 1 | Holló Balázs (1999)BVSC-Zugló | 03:48.04 96.364% | - | D4 | |
| 2 | Betlehem Dávid (2003)Balaton ÚK Veszprém | 03:48.36 98.759% | 00.32 | D5 | |
| 3 | Mészáros Dániel (2004)FTC | 03:48.52 98.494% | 00.48 | D3 | |
| 4 | Sárkány Zalán (2003)Kőbánya Sport Club | 03:48.69 101.346% | 00.65 | D6 | |
| 5 | Rasovszky Kristóf (1997)Balaton ÚK Veszprém | 03:49.01 96.805% | 00.97 | D2 | |
| 6 | Hartmann Máté (2005)Pécsi Sport Nonprof. | 03:49.26 100.921% | 01.22 | D7 | |
| 7 | Zombori Gábor (2002)Újpesti Torna Egylet | 03:49.81 101.757% | 01.77 | D1 | |
| 8 | Kalmár Ákos (2000)Balaton ÚK Veszprém | 03:51.33 99.339% | 03.29 | D8 | |
| 9 | Gálicz László (2004)FTC | 03:52.17 101.939% | 04.13 | T1 | |
| 10 | Tóth Benedek Viktor (2006)Kőbánya Sport Club | 03:54.59 103.389% | 06.55 | T2 | |
| 11 | Pintér Ádám (2004)Balaton ÚK Veszprém | 03:54.80 99.974% | 06.76 | ||
| 12 | Hambardzumyan Arshak (2004)Újpesti Torna Egylet | 03:54.85 100.643% | 06.81 | ||
| 13 | Kaiser Dominik (2007)Újpesti Torna Egylet | 03:54.94 101.049% | 06.90 | ||
| 14 | Csicsáky Péter (2003)BVSC-Zugló | 03:55.61 100.746% | 07.57 | ||
| 15 | Hajagos Ákos (2004)Balaton ÚK Veszprém | 03:56.15 105.415% | 08.11 | ||
| 16 | Györe Ádám (2004)Egri Úszó Klub | 03:58.53 102.378% | 10.49 | ||
| 17 | Deák Levente (2005)Soproni Széchy T. SI | 03:59.32 101.405% | 11.28 | ||
| 18 | Juhász-Dóra Richárd (2005)Kőbánya Sport Club | 04:00.44 100.632% | 12.40 | ||
| 19 | Demjén Bátor (2003)BÁCSVÍZ SC | 04:00.52 100.066% | 12.48 | ||
| 20 | VALIZADA Ramil (2004)Azerbaijan | 04:00.75 100.253% | 12.71 | ||
| 21 | Poteczin Dániel (2006)Érdi Vízisport Kft | 04:01.79 99.959% | 13.75 | ||
| 22 | Pál Vince (2005)Újpesti Torna Egylet | 04:01.83 100.268% | 13.79 | ||
| 23 | Dort Máté (2003)DKSE Dunaújváros | 04:02.17 101.171% | 14.13 | ||
| 24 | Tohl Dániel Antal (2005)Érdi Vízisport Kft | 04:04.04 100.986% | 16.00 | ||
| 25 | Szedlák Gellért Vajk (2004)Vasas Sport Club | 04:06.61 96.352% | 18.57 | ||
| 26 | Illés Bence (2005)A Jövő SC | 04:10.18 99.892% | 22.14 | ||
| 27 | Nagy-Selmeczy Bulcsú (2007)Zalaco ZÚK | 04:11.99 100.862% | 23.95 | ||
| - | Harsányi Mátyás (2005)Kaposvári SI | DNS - | |||