| RK | LN | Name | Time | Gap | FINA | Q? |
|---|---|---|---|---|---|---|
| 1 | 5 | Petróczki Zsombor (2008)Békéscsabai EUK | 58.10 | - | 616 | |
| 2 | 4 | Biben Botond (2009)BVSC-Zugló | 58.24 | 00.14 | 612 | |
| 3 | 3 | Spisák Bence (2008)Budaörsi Sport Club | 59.33 | 01.23 | 578 | |
| 4 | 6 | Nagy-Benedek Olivér (2008)Békéscsabai EUK | 01:01.53 | 03.43 | 519 | |
| 5 | 2 | Nemes Ármin Boldizsár (2009)Kőbánya Sport Club | 01:01.82 | 03.72 | 511 | |
| 6 | 7 | Eitler Péter Patrik (2008)Debreceni Sportc. SI | 01:01.90 | 03.80 | 509 | |
| 7 | 1 | Kreisz Bálint (2009)Bohóchal | 01:01.96 | 03.86 | 508 | |
| 8 | 8 | Pásztor Hunor (2008)Swim.Pent | 01:03.54 | 05.44 | 471 |