| RK | LN | Name | Time | Gap | FINA | Q? |
|---|---|---|---|---|---|---|
| 1 | 4 | Alexandru Sebastián (2013)FTC | 42.49R:0.78 | - | 227 | |
| 2 | 5 | Császár-Bíró Máté (2013)Kőbánya Sport Club | 43.21R:0.68 | 00.72 | 216 | |
| 3 | 1 | Oláh Mátyás (2013)FTC | 44.26R:0.7 | 01.77 | 201 | |
| 4 | 3 | Fűr-Kovács Dániel (2009)II. Kerületi Sport | 44.34R:0.82 | 01.85 | 200 | |
| 5 | 2 | Dmitrenko Nikita (2015)Bohóchal | 47.82R:0.61 | 05.33 | 159 | |
| 6 | 6 | Hollósi Zalán (2012)Bohóchal | 48.22R:0.71 | 05.73 | 155 | |
| 7 | 7 | Győri Ádám István (2015)Balaton ÚK Veszprém | 48.68R:0.8 | 06.19 | 151 | |
| 8 | 0 | Szalai Marcell (2014)FTC | 53.22R:0.76 | 10.73 | 115 | |
| 9 | 8 | Győrffy Kende (2015)II. Kerületi Sport | 56.62R:0.64 | 14.13 | 96 | |
| 10 | 9 | Gelegonya Levente (2016)Budapesti Honvéd SE | 59.69R:0.55 | 17.20 | 82 |