| RK | Name | H/L | Time | Gap | Q |
|---|---|---|---|---|---|
| 1 | Takács Tamás (1998)BVSC-Zugló | 01:03.42 96.169% | - | A4 | |
| 2 | Marián Dragúň (2006)Slovakia | 01:04.02 98.381% | 00.60 | A5 | |
| 3 | Berecz Balázs (2000)Kőbánya Sport Club | 01:04.23 97.576% | 00.81 | A3 | |
| 4 | Horváth Dávid (1996)Kőbánya Sport Club | 01:04.57 95.298% | 01.15 | A6 | |
| 5 | Zombori Gábor (2002)Újpesti Torna Egylet | 01:05.11 99.023% | 01.69 | A2 | |
| 6 | Herman Szabó Péter (2007)Győri Úszó Sportegy. | 01:05.66 99.633% | 02.24 | A7 | |
| 7 | Sámóczi Milán (2005)Kőbánya Sport Club | 01:05.93 97.688% | 02.51 | A1 | |
| 8 | Áment Balázs (2004)Balaton ÚK Veszprém | 01:06.57 98.784% | 03.15 | A8 | |
| 9 | Tumbász Noel (2005)Vasas Sport Club | 01:07.82 97.537% | 04.40 | B4 | |
| 10 | Börzsei Zalán (2007)Soproni Széchy T. SI | 01:09.92 97.703% | 06.50 | B5 | |
| 11 | Buda Levente (2008)Győri Úszó Sportegy. | 01:12.92 104.642% | 09.50 | B3 | |
| 12 | Baumann Marcell (2006)Győri Úszó Sportegy. | 01:13.45 99.093% | 10.03 | B6 | |
| 13 | Bencsik Emil Henrik (2005)Érdi Vízisport Kft | 01:13.99 98.268% | 10.57 | B2 | |
| 14 | Németh Ádám (2005)Újpesti Torna Egylet | 01:16.17 95.999% | 12.75 | B7 | |
| 15 | Haris Bence (2008)Győri Úszó Sportegy. | 01:17.59 98.932% | 14.17 | B1 | |
| 16 | Bobola Balázs (2007)Budafóka XXII. SE | 01:17.93 98.037% | 14.51 | B8 | |
| 17 | Koch Ambrus (2008)Soproni Széchy T. SI | 01:24.57 96.816% | 21.15 | T1 | |
| 18 | Sipkovits Vilmos (2009)Győri Úszó Sportegy. | 01:30.62 94.763% | 27.20 | T2 | |
| - | Bláha Sebastián (2006)Slovakia | DNS - | |||