| RK | LN | Name | Time | Gap | FINA | Q? |
|---|---|---|---|---|---|---|
| 1 | 4 | Pop Mihnea (2008)SP Flykick | 00:55.65 | - | 701 | |
| 2 | 3 | Hermann Ben (2000)Swim Team Biel-Bienne | 00:57.33 | 00:01.68 | 641 | |
| 3 | 5 | Bizau Patrik (2004)SP Flykick | 00:59.23 | 00:03.58 | 581 | |
| 4 | 7 | Dandin Niall (2008)Swim Team Biel-Bienne | 01:01.43 | 00:05.78 | 521 | |
| 5 | 6 | Kenyeres Gergő (2008)Debreceni Sportc. SI | 01:01.66 | 00:06.01 | 515 | |
| 6 | 1 | Ozsvárt Gábor (2009)Parafa Úszó Klub | 01:03.71 | 00:08.06 | 467 | |
| 7 | 2 | Diserens David (2005)Swim Team Biel-Bienne | 01:04.83 | 00:09.18 | 443 | |
| 8 | 8 | Szilágyi Barna (2008)Debreceni Sportc. SI | 01:05.37 | 00:09.72 | 432 |