| RK | LN | Name | Time | Gap | FINA | Q? |
|---|---|---|---|---|---|---|
| 1 | 4 | Vida Botond Attila (2012)Four Diamonds SE | 03:00.66 | - | 335 | |
| 2 | 5 | Calapis Alexandru (2012)CSM Arad | 03:06.86 | 06.20 | 302 | |
| 3 | 3 | Ozsvar Patrick Norbert (2010)Gyulai Várfürdő Kft. | 03:09.62 | 08.96 | 289 | |
| 4 | 6 | Pásztor Gyula (2013)Békési Úszó Klub E. | 03:16.43 | 15.77 | 260 | |
| 5 | 1 | Kiss Milán (2012)Four Diamonds SE | 03:19.03 | 18.37 | 250 | |
| 6 | 7 | Keresztúri Zsombor (2013)Békéscsabai EUK | 03:23.28 | 22.62 | 235 | |
| 7 | 2 | Hajdu Máté (2013)Tótkomlósi UE | 03:24.62 | 23.96 | 230 | |
| 8 | 8 | Lantos Barnabás (2013)Békéscsabai EUK | 03:29.68 | 29.02 | 214 |